Member churches of the Estonian Council of Churches are:

1. Estonian Evangelical-Lutheran Church
2. Union of Evangelical Christian and Baptist Churches of Estonia
3. Estonian Methodist Church
4. Roman Catholic Church
5. Estonian Christian Pentecostal Church
6. Estonian Conference of SDA (Seventh-day Adventists) Church
7. Estonian Congregation St. Gregory of the Armenian Apostolic Church
8. Orthodox Church of Estonia
9. Estonian Orthodox Church of Moscow Patriarchy
10. Charismatic Episcopal Church of Estonia

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